Bioconductor Hierarchical clustering

Showing : hierarchical clustering • reset

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dynamictreecut wgcna hierarchical clustering

6.2 years ago jol.espinoz ▴ 40

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1.8k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

6.8 years ago lawarde.ankita1 ▴ 30

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limma clustering differential gene expression hierarchical clustering feature selection

7.2 years ago lirongrossmann ▴ 80

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clustering hierarchical clustering

written 7.3 years ago by hrishi27n ▴ 20

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hclust hierarchical clustering clustering weight

updated 7.3 years ago by Aaron Lun ★ 28k • written 7.3 years ago by danielle.newby • 0

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7.3k

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deseq2 rnaseq PCA hierarchical clustering outlier

8.0 years ago wd ▴ 30

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Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

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Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

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